VOLUME 17 NUMBER 2 (July to December 2024)

PSL%202021 vol14-no01-p12-28-Mikita%20and%20Padlan

SciEnggJ. 2024 17 (2) 263-73
available online: December 16, 2024
DOI: https://doi.org/10.54645/2024172HKM-26

*Corresponding author
Email Address: pnlubenia@upd.edu.ph
Date received: June 4, 2024
Date revised: August 15, 2024
Date accepted: September 5, 2024

ARTICLE

Comparison of reaction networks of insulin signaling

Patrick Vincent N. Lubenia*1, Eduardo R. Mendoza1,2,3, and Angelyn R. Lao1,2,4

1Systems and Computational Biology Research Unit, Center for
     Natural Sciences and Environmental Research, 2401
     Taft Avenue, Manila, 0922, Metro Manila, Philippines;
2Department of Mathematics and Statistics, De La Salle University,
     2401 Taft Avenue, Manila, 0922, Metro Manila, Philippines;
3Max Planck Institute of Biochemistry, Am Klopferspitz 18, 82152,
     Martinsried near Munich, Germany;
4Center for Complexity and Emerging Technologies, 2401
     Taft Avenue, Manila, 0922, Metro Manila, Philippines

KEYWORDS: concordance, embedded networks, insulin signaling, network translation, reaction networks

Understanding the insulin signaling cascade provides insights into the underlying mechanisms of biological phenomena such as insulin resistance, diabetes, Alzheimer’s disease, and cancer. For this reason, previous studies utilized chemical reaction network theory to perform comparative analyses of reaction networks of insulin signaling in healthy (INSMS: INSulin Metabolic Signaling) and diabetic cells (INRES: INsulin RESistance). This study extends these analyses using various methods which give further insights regarding insulin signaling. Using embedded networks, we discuss evidence of the presence of a structural “bifurcation” in the signaling process between INSMS and INRES. Concordance profiles of INSMS and INRES show that both have a high propensity to remain monostationary. Moreover, the concordance properties allow us to present heuristic evidence that INRES has a higher level of stability beyond its monostationarity. Finally, we discuss a new way of analyzing reaction networks through network translation. This method gives rise to three new insights: (i) each stoichiometric class of INSMS and INRES contains a unique positive equilibrium; (ii) any positive equilibrium of INSMS is exponentially stable and is a global attractor in its stoichiometric class; and (iii) any positive equilibrium of INRES is locally asymptotically stable. These results open up opportunities for collaboration with experimental biologists to understand insulin signaling better.

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